My undergraduate research adviser Dan Snowden-Ifft always told me that the best and worst thing about computers is that they always do exactly what you tell them to do. If what they are doing isn't what you expect, then it is because you told them to do something wrong. This applies to my current situation with the randoms not matching because I was in fact asking the computer to print out the wrong numbers, and so of course they didn't match. I am in idiot sometimes. Here are some nice plots of it working now:
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